Datasets:

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nonchev

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TCGA_virtual_spatial_transcriptomics

like 15

Thank you for your feedback, @Farhat27 !

This is due to different coordinate conventions used across imaging and analysis packages. The convention used in the AnnData object is consistent throughout the dataset and processing pipeline, so the columns were not swapped during processing. The key is to use the coordinates consistently with the plotting framework being used.

Thanks for bringing this up!

Please also feel free to share any feedback on the dataset itself and whether it was useful for your analysis.

Thank you for the clarification.

The dataset has been very useful for my analysis so far. Thank you again for creating and sharing it