cyd0806/neuronmimic-data

NeuronMimic reusable data (2026-10-30)

This dataset contains compact, source-bound tables and a deterministic passive cable fixture for reproducing the NeuronMimic baselines. It deliberately does not contain restricted raw MaleCNS/FlyWire connectome downloads or any claim of biological validation.

The current structure/dynamics requirement matrix is maintained in the parent BioFly project at artifacts/wu_20261030_science_gate/WU_REQUIREMENTS_STATUS_20261030.md.

Contents

• physics_teacher/: historical fixture archive. Its old evaluation metrics are INVALIDATED; use p0_corrected_20261030/fixture_v2/ instead.
• malecns/: historical normalized source-bound aggregate tables. Endpoint annotation joins are BLOCKED: 31,355 edge endpoint IDs do not match even the full source id column. These tables are not a validated complete CNS or simulation-ready network.
• flywire_kc_atlas/: compact all-5,177-cell structural profiles and the source-bound 20-unit entry registry. This is single-connectome structural evidence, not independent biological replication.
• provenance/: protocol and source manifests.

Links

• Code: https://github.com/ydchen0806/neuronmimic
• Parent analysis repository: https://github.com/ydchen0806/bio_fly_cyber_lateralization
• Dataset: https://huggingface.co/datasets/cyd0806/neuronmimic-data

The GitHub repository documents the code and the exact analysis boundaries; this dataset provides the compact inputs and receipts. Raw data remain at their original public repositories and are not mirrored here.

Status and limits

FIXTURE_TEST_ONLY is synthetic/passive-cable testing. VERIFIED_REAL_DATA means the local source table was hashed and schema-checked. BLOCKED_MISSING_DATA means the data required for a real multi-compartment biological calibration are not present, especially contact coordinates, branch IDs, conductance values, and held-out physiological recordings.

Corrected P0 release

Use p0_corrected_20261030/fixture_v2/ for reproducible Teacher data, four model baselines, and corrected results. Historical metric files are invalidated; see HISTORICAL_METRICS_INVALIDATED.md. All cable experiments are FIXTURE_TEST_ONLY. Code and scientific metric tests: https://github.com/ydchen0806/neuronmimic . Known-equation PhysicsOnly is more accurate than the trained Students; no biological or speed-accuracy advantage is established.

P1-v2.2 geometry and structure release

p1_v2_fine_types/ contains the 5,177-cell identity registry, CM/SU crosswalk, all directed pair split assignments, contact-free tree descriptors, six genuine spatial fusion ablations, full-parent child membership, model predictions, figures and audit receipts. See its P1_REPORT.md for conclusions and limits. The 18-cell left-ap1 residual subset is exploratory, not a validated functional unit. Original stable8 remains unchanged.

Reproduction instructions: https://github.com/ydchen0806/neuronmimic/blob/master/docs/P1_REPRODUCE.md . The full soma distance matrix is exactly regenerated by the script rather than downloaded. Raw-source audits and geometry extraction are not rerun by the compact replay; their original hashes and receipts are provided. Do not treat imported audit receipts as a fresh audit. Upstream data retain their original source terms; this release does not grant a new license for the original connectomes. No independent physiology or wet-lab calibration data are included.