BodyMaps/CancerVerse

HuggingFace Environment Setup

conda create -n huggingface python=3.11 -y
conda activate huggingface
python -m pip install --upgrade pip
python -m pip install --upgrade "huggingface_hub[cli]"
hf --version
hf auth login

Download CancerVerse

mkdir CancerVerse
cd CancerVerse
bash download_cancerverse.sh

Citation

If you find CancerVerse useful in your research, please cite:

@inproceedings{li2024well,
  title={How well do supervised models transfer to 3d image segmentation},
  author={Li, Wenxuan and Yuille, Alan and Zhou, Zongwei},
  booktitle={The Twelfth International Conference on Learning Representations},
  volume={1},
  year={2024}
}

@article{li2024abdomenatlas,
  title={AbdomenAtlas: A large-scale, detailed-annotated, \& multi-center dataset for efficient transfer learning and open algorithmic benchmarking},
  author={Li, Wenxuan and Qu, Chongyu and Chen, Xiaoxi and Bassi, Pedro RAS and Shi, Yijia and Lai, Yuxiang and Yu, Qian and Xue, Huimin and Chen, Yixiong and Lin, Xiaorui and others},
  journal={Medical Image Analysis},
  volume={97},
  pages={103285},
  year={2024},
  publisher={Elsevier}
}

license: cc-by-nc-4.0