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https://huggingface.co/OneScience-Group/Scale-MAE/resolve/main/scripts/result.py
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curl -L -o result.py https://huggingface.co/OneScience-Group/Scale-MAE/resolve/main/scripts/result.py
4.56 kB
| """Evaluate Scale-MAE reconstruction, kNN transfer and GSD sensitivity.""" | |
| import json | |
| import argparse | |
| from pathlib import Path | |
| import matplotlib.pyplot as plt | |
| import numpy as np | |
| import yaml | |
| ROOT = Path(__file__).resolve().parents[1] | |
| def knn_predict(train_features, train_labels, test_features, k=3): | |
| train = train_features / np.maximum(np.linalg.norm(train_features, axis=1, keepdims=True), 1e-8) | |
| test = test_features / np.maximum(np.linalg.norm(test_features, axis=1, keepdims=True), 1e-8) | |
| nearest = np.argsort(-(test @ train.T), axis=1)[:, :min(k, len(train))] | |
| return np.asarray([np.bincount(train_labels[row]).argmax() for row in nearest]) | |
| def rgb(image): | |
| return np.clip(image[:3].transpose(1, 2, 0), 0, 1) | |
| def main(): | |
| parser = argparse.ArgumentParser(description="Evaluate Scale-MAE outputs") | |
| parser.add_argument("--config", default=str(ROOT / "conf/config.yaml")) | |
| args = parser.parse_args() | |
| cfg = yaml.safe_load(Path(args.config).read_text()) | |
| source = ROOT / cfg["paths"]["inference_dir"] / "reconstruction.npz" | |
| if not source.exists(): | |
| raise FileNotFoundError("Run inference before evaluation") | |
| data = np.load(source) | |
| for key in ("prediction", "target", "test_features", "train_features", "labels", "gsd"): | |
| if key not in data: raise ValueError(f"inference archive missing {key}") | |
| if not np.isfinite(data["prediction"]).all(): raise FloatingPointError("non-finite inference output") | |
| prediction = knn_predict(data["train_features"], data["train_labels"], data["test_features"]) | |
| accuracy = float(np.mean(prediction == data["labels"])) | |
| mse = np.mean((data["prediction"] - data["target"]) ** 2, axis=(1, 2, 3)) | |
| low_mse = float(np.mean((data["low_prediction"] - data["low_target"]) ** 2)) | |
| high_mse = float(np.mean((data["high_prediction"] - data["high_target"]) ** 2)) | |
| gsd_values = sorted(np.unique(data["gsd"]).tolist()) | |
| gsd_mse = {str(value): float(np.mean(mse[data["gsd"] == value])) for value in gsd_values} | |
| gsd_accuracy = {str(value): float(np.mean(prediction[data["gsd"] == value] == data["labels"][data["gsd"] == value])) | |
| for value in gsd_values} | |
| result = {"reconstruction_mse": float(np.mean(mse)), "low_frequency_mse": low_mse, | |
| "high_frequency_mse": high_mse, "knn_accuracy": accuracy, | |
| "gsd_reconstruction_mse": gsd_mse, "gsd_knn_accuracy": gsd_accuracy, | |
| "data_source": "synthetic", "protocol": cfg["data"]["protocol"]} | |
| output = ROOT / cfg["paths"]["evaluation_dir"] | |
| output.mkdir(parents=True, exist_ok=True) | |
| (output / "metrics.json").write_text(json.dumps(result, indent=2) + "\n") | |
| figure, axes = plt.subplots(2, 3, figsize=(9, 6)) | |
| images = ((data["target"][0], "Original"), (data["low_target"][0], "Low target"), | |
| (data["high_target"][0] + 0.5, "High target"), (data["prediction"][0], "Reconstruction"), | |
| (data["low_prediction"][0], "Low prediction"), (data["high_prediction"][0] + 0.5, "High prediction")) | |
| for axis, (image, title) in zip(axes.flat, images): | |
| axis.imshow(rgb(image)); axis.set_title(title); axis.axis("off") | |
| figure.tight_layout(); figure.savefig(output / "bandpass_reconstruction.png", dpi=160); plt.close(figure) | |
| figure, axis = plt.subplots(figsize=(6, 3.5)) | |
| axis.plot(gsd_values, [gsd_mse[str(x)] for x in gsd_values], marker="o", color="#1f77b4") | |
| axis.set(xlabel="GSD (m/pixel)", ylabel="Reconstruction MSE", title="Scale-aware Reconstruction") | |
| axis.grid(alpha=0.25) | |
| figure.tight_layout(); figure.savefig(output / "gsd_reconstruction_error.png", dpi=160); plt.close(figure) | |
| figure, axis = plt.subplots(figsize=(6, 3.5)) | |
| axis.plot(gsd_values, [gsd_accuracy[str(x)] for x in gsd_values], marker="s", color="#d62728") | |
| axis.set(xlabel="GSD (m/pixel)", ylabel="kNN accuracy", title="Scale-aware Feature Transfer") | |
| axis.set_ylim(0, 1.05); axis.grid(alpha=0.25) | |
| figure.tight_layout(); figure.savefig(output / "gsd_knn_accuracy.png", dpi=160); plt.close(figure) | |
| figure, axis = plt.subplots(figsize=(5, 3)) | |
| axis.bar(["Low frequency", "High frequency"], [low_mse, high_mse], color=["#2a9d8f", "#e76f51"]) | |
| axis.set(ylabel="MSE", title="Bandpass Reconstruction Error") | |
| figure.tight_layout(); figure.savefig(output / "frequency_error.png", dpi=160); plt.close(figure) | |
| np.save(output / "features.npy", data["test_features"]) | |
| print(json.dumps(result, indent=2)); print("evaluation=", output) | |
| if __name__ == "__main__": | |
| main() | |